PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 17086
Common NameSELMODRAFT_17085, SELMODRAFT_17086
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family AP2
Protein Properties Length: 157aa    MW: 18354.4 Da    PI: 10.2988
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
17086genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.47.5e-08251855
    AP2  8 wdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55
           +++++ r++A+++d  ++  g r ++ + g ++++e Aa+a++ a++k++g
  17086  2 RHRWTRRYEAHLWDnSYKqPG-RdRKGRQGGYDSEENAARAYDLAALKYWG 51
           7999**********6555644.334444488******************98 PP

2AP2552e-1794145155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
            s ++GV+++++ grW A+I  +        k  +lg+fgt+eeAa+a+++a+ k++g
  17086  94 SVFRGVTRHHQHGRWQARIGRV-----AghKDLYLGTFGTEEEAAEAYDRAAIKYRG 145
            689***************9885.....235*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-5251IPR001471AP2/ERF domain
PROSITE profilePS5103215.185259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-9259IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-11260IPR016177DNA-binding domain
SMARTSM003806.4E-10265IPR001471AP2/ERF domain
PfamPF008471.1E-1294145IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1894155IPR016177DNA-binding domain
CDDcd000182.01E-2094155No hitNo description
PROSITE profilePS5103218.22895153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1895153IPR001471AP2/ERF domain
SMARTSM003807.1E-2595157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
SRHRWTRRYE AHLWDNSYKQ PGRDRKGRQG GYDSEENAAR AYDLAALKYW GPNTIINFPL  60
GNYTKELEEM KHNTRQEYVA AIRRKSDGFS RGTSVFRGVT RHHQHGRWQA RIGRVAGHKD  120
LYLGTFGTEE EAAEAYDRAA IKYRGLKAIT NFEISRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974195.11e-113hypothetical protein SELMODRAFT_17086, partial
RefseqXP_002975048.11e-113hypothetical protein SELMODRAFT_17085, partial
SwissprotQ5YGP87e-87PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLD8RSY01e-113D8RSY0_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ238331e-113(Selaginella moellendorffii)
STRINGEFJ244171e-113(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-82AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]